PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn141911
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 362aa    MW: 39157.6 Da    PI: 6.7918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn141911genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.3e-10103147347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r     Rt+ q+ s  qky
       Achn141911 103 PWTEEEHRMFLLGLQKLGKGDWRGISRSYVISRTPTQVASQAQKY 147
                      7****************************989************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.107.5E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129415.60696152IPR017930Myb domain
SuperFamilySSF466893.14E-1598153IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-1699151IPR006447Myb domain, plants
SMARTSM007171.8E-8100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9101142IPR009057Homeodomain-like
CDDcd001672.86E-8103148No hitNo description
PfamPF002497.9E-9103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL IDGSFRKSAS MGNLTHYTGS GSGSGPHGVA  60
AQNHLDSPDN TPDHGVAAAA DGYASEDFVP GSSSSRERKK GIPWTEEEHR MFLLGLQKLG  120
KGDWRGISRS YVISRTPTQV ASQAQKYFIR QSNTSRRKRR SSLFDMEADE SVDTPMESHD  180
FFPVNPPQAD AQTQNPLPEP PALDEECESM DSTNSNDQEP ILQKPDIAPC CYPVIFPAYI  240
SPFLPIPVPY WAGPDHSTDP AKTGTHEVLK PTAVHWKSPI NVDELVGMSK LSLGESIENA  300
GSGTSSLSLK LLKGSTRQSA FHANPASESS HVNSSSSPIH AVWKSDISLE VVGWLTAVVG  360
L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368993.11e-175syringolide-induced protein 1-3-1B
TrEMBLB9MUR91e-175B9MUR9_POPTR; Syringolide-induced protein 1-3-1B
STRINGPOPTR_0001s15510.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70622431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-124MYB_related family protein